Journal of Guangxi Normal University(Natural Science Edition) ›› 2026, Vol. 44 ›› Issue (4): 195-209.doi: 10.16088/j.issn.1001-6600.2025070805
• Agricultural Science • Previous Articles Next Articles
Wang Ruru1,2,3, Yan Xiangting1,2,3, Liu Zongbao2,4,5, Chen Rongshu1,2,3*, Zhu Jing1,2,3
| [1] Saccá M L, Barra Caracciolo A, Di Lenola M, et al. Ecosystem services provided by soil microorganisms[M]//Soil Biological Communities and Ecosystem Resilience. Cham: Springer International Publishing, 2017: 9-24. DOI: 10.1007/978-3-319-63336-7_2. [2] Delgado-Baquerizo M, Oliverio A M, Brewer T E, et al. A global atlas of the dominant bacteria found in soil[J]. Science, 2018, 359(6373): 320-325. DOI: 10.1126/science.aap9516. [3] Philippot L, Chenu C, Kappler A, et al. The interplay between microbial communities and soil properties[J]. Nature Reviews Microbiology, 2024, 22(4): 226-239. DOI: 10.1038/s41579-023-00980-5. [4] Karimi B, Terrat S, Dequiedt S, et al. Biogeography of soil bacteria and archaea across France[J]. Science Advances, 2018, 4(7): eaat1808. DOI: 10.1126/sciadv.aat1808. [5] Griffiths R I, Thomson B C, Plassart P, et al. Mapping and validating predictions of soil bacterial biodiversity using European and national scale datasets[J]. Applied Soil Ecology, 2016, 97: 61-68. DOI: 10.1016/j.apsoil.2015.06.018. [6] Kemmitt S, Wright D, Goulding K, et al. pH regulation of carbon and nitrogen dynamics in two agricultural soils[J]. Soil Biology and Biochemistry, 2006, 38(5): 898-911. DOI: 10.1016/j.soilbio.2005.08.006. [7] Zhang J, Wang P C, Tian H M, et al. Pyrosequencing-based assessment of soil microbial community structure and analysis of soil properties with vegetable planted at different years under greenhouse conditions[J]. Soil and Tillage Research, 2019, 187: 1-10. DOI: 10.1016/j.still.2018.11.008. [8] Griffiths R I, Thomson B C, James P, et al. The bacterial biogeography of British soils[J]. Environmental Microbiology, 2011, 13(6): 1642-1654. DOI: 10.1111/j.1462-2920.2011.02480.x. [9] Zhou X, Tahvanainen T, Malard L, et al. Global analysis of soil bacterial genera and diversity in response to pH[J]. Soil Biology and Biochemistry, 2024, 198: 109552. DOI: 10.1016/j.soilbio.2024.109552. [10] Fierer N, Bradford M A, Jackson R B. Toward an ecological classification of soil bacteria[J]. Ecology, 2007, 88(6): 1354-1364. DOI: 10.1890/05-1839. [11] De Menezes A B, Prendergast-Miller M T, Poonpatana P, et al. C/N ratio drives soil actinobacterial cellobiohydrolase gene diversity[J]. Applied and Environmental Microbiology, 2015, 81(9): 3016-3028. DOI: 10.1128/AEM.00067-15. [12] Baker B J, De Anda V, Seitz K W, et al. Diversity, ecology and evolution of archaea[J]. Nature Microbiology, 2020, 5(7): 887-900. DOI: 10.1038/s41564-020-0715-z. [13] Rampelotto P H. Extremophiles and extreme environments[J]. Life, 2013, 3(3): 482-485. DOI: 10.3390/life3030482. [14] Zou D Y, Qi Y L, Zhou J J, et al. Unveiling the life of archaea in sediments: diversity, metabolic potentials, and ecological roles[J]. iMetaOmics, 2025, 2(1): e56. DOI: 10.1002/imo2.56. [15] Kemnitz D, Kolb S, Conrad R. High abundance of Crenarchaeota in a temperate acidic forest soil[J]. FEMS Microbiology Ecology, 2007, 60(3): 442-448. DOI: 10.1111/j.1574-6941.2007.00310.x. [16] Pesaro M, Widmer F. Identification of novel Crenarchaeota and Euryarchaeota clusters associated with different depth layers of a forest soil[J]. FEMS Microbiology Ecology, 2002, 42(1): 89-98. DOI: 10.1016/S0168-6496(02)00302-1. [17] Bahram M, Hildebrand F, Forslund S K, et al. Structure and function of the global topsoil microbiome[J]. Nature, 2018, 560(7717): 233-237. DOI: 10.1038/s41586-018-0386-6. [18] Wei G S, Li M C, Shi W C, et al. Similar drivers but different effects lead to distinct ecological patterns of soil bacterial and archaeal communities[J]. Soil Biology and Biochemistry, 2020, 144: 107759. DOI: 10.1016/j.soilbio.2020.107759. [19] Ma B, Dai Z M, Wang H Z, et al. Distinct biogeographic patterns for archaea, bacteria, and fungi along the vegetation gradient at the continental scale in Eastern China[J]. mSystems, 2017, 2(1): e00174-e00116. DOI: 10.1128/mSystems.00174-16. [20] Guseva K, Darcy S, Simon E, et al. From diversity to complexity: microbial networks in soils[J]. Soil Biology and Biochemistry, 2022, 169: 108604. DOI: 10.1016/j.soilbio.2022.108604. [21] Li K, Xing X Y, Wang S B, et al. Organic fertilisation enhances network complexity among bacteria, fungi, and protists by improving organic matter and phosphorus in acidic agricultural soils[J]. European Journal of Soil Biology, 2024, 122: 103649. DOI: 10.1016/j.ejsobi.2024.103649. [22] Shi J W, Yang L, Liao Y, et al. Soil labile organic carbon fractions mediate microbial community assembly processes during long-term vegetation succession in a semiarid region[J]. iMeta, 2023, 2(4): e142. DOI: 10.1002/imt2.142. [23] Fan K K, Weisenhorn P, Gilbert J A, et al. Soil pH correlates with the co-occurrence and assemblage process of diazotrophic communities in rhizosphere and bulk soils of wheat fields[J]. Soil Biology and Biochemistry, 2018, 121: 185-192. DOI: 10.1016/j.soilbio.2018.03.017. [24] Duan Y L, Zhang J B, Petropoulos E, et al. Soil acidification destabilizes terrestrial ecosystems via decoupling soil microbiome[J]. Global Change Biology, 2025, 31(4): e70174. DOI: 10.1111/gcb.70174. [25] 宋同清, 彭晚霞, 杜虎, 等. 中国西南喀斯特石漠化时空演变特征、发生机制与调控对策[J]. 生态学报, 2014, 34(18): 5328-5341. DOI: 10.5846/stxb201405090929. [26] 王智慧, 蒋先军. 紫色土中微生物群落结构及功能特征对土壤pH的差异响应[J]. 环境科学, 2022, 43(7): 3876-3883. DOI: 10.13227/j.hjkx.202111055. [27] Ma X M, Zhou Z, Chen J, et al. Long-term nitrogen and phosphorus fertilization reveals that phosphorus limitation shapes the microbial community composition and functions in tropical montane forest soil[J]. Science of the Total Environment, 2023, 854: 158709. DOI: 10.1016/j.scitotenv.2022.158709. [28] 鲍士旦. 土壤农化分析[M]. 3版. 北京: 中国农业出版社, 2000. [29] 鲁如坤. 土壤农业化学分析方法[M]. 北京: 中国农业科学技术出版社, 2000. [30] 吴雨纯, 秦明森, 肖海钰, 等. 嘉陵江干流微塑料附着微生物的群落构建机制[J]. 应用与环境生物学报, 2025, 31(1): 1-11. DOI: 10.19675/j.cnki.1006-687x.2024.06006. [31] Louca S, Parfrey L W, Doebeli M. Decoupling function and taxonomy in the global ocean microbiome[J]. Science, 2016, 353(6305): 1272-1277. DOI: 10.1126/science.aaf4507. [32] 刘瑛涵, 任伟征, 赵璐峰, 等. 稻鱼共生系统土壤微生物群落组成和功能特征[J]. 华南农业大学学报, 2024, 45(6): 865-877. DOI: 10.7671/j.issn.1001-411X.202406032. [33] Li H, Yang S, Semenov M V, et al. Temperature sensitivity of SOM decomposition is linked with a K-selected microbial community[J]. Global Change Biology, 2021, 27(12): 2763-2779. DOI: 10.1111/gcb.15593. [34] Chen Y J, Neilson J W, Kushwaha P, et al. Life-history strategies of soil microbial communities in an arid ecosystem[J]. The ISME Journal, 2021, 15(3): 649-657. DOI: 10.1038/s41396-020-00803-y. [35] Shao P S, Lynch L, Xie H T, et al. Tradeoffs among microbial life history strategies influence the fate of microbial residues in subtropical forest soils[J]. Soil Biology and Biochemistry, 2021, 153: 108112. DOI: 10.1016/j.soilbio.2020.108112. [36] 刘开朗, 王加启, 卜登攀, 等. 环境微生物群落结构与功能多样性研究方法[J]. 生态学报, 2010, 30(4): 1074-1080. DOI: 10.20103/j.stxb.2010.04.029. [37] Li X, Zhang Y, Song S M, et al. Bacterial diversity patterns differ in different patch types of mixed forests in the upstream area of the Yangtze River Basin[J]. Applied Soil Ecology, 2021, 161: 103868. DOI: 10.1016/j.apsoil.2020.103868. [38] 马姣娇, 高常军, 易小青, 等. 广东海丰湿地生态恢复进程中不同生境的土壤微生物特征分析[J]. 环境科学, 2023, 44(5): 2908-2917. DOI: 10.13227/j.hjkx.202205179. [39] 李敏, 郝伟. 大兴安岭4个树种根围土壤细菌群落结构[J]. 生态学杂志, 2021, 40(7): 2057-2066. DOI: 10.13292/j.1000-4890.202107.008. [40] Yuan Y L, Si G C, Wang J, et al. Bacterial community in alpine grasslands along an altitudinal gradient on the Tibetan Plateau[J]. FEMS Microbiology Ecology, 2014, 87(1): 121-132. DOI: 10.1111/1574-6941.12197. [41] 郭城. 石漠化地区不同植被恢复模式下土壤微生物群落结构研究[D]. 贵阳: 贵州师范大学, 2021. [42] 段昌海, 张翠景, 孙艺华, 等. 新型产甲烷古菌研究进展[J]. 微生物学报, 2019, 59(6): 981-995. DOI: 10.13343/j.cnki.wsxb.20180435. [43] Wang Y Q, Shahbaz M, Zhran M, et al. Microbial resource limitation in aggregates in karst and non-karst soils[J]. Agronomy, 2021, 11(8): 1591. DOI: 10.3390/agronomy11081591. [44] Xu Z W, Yu G R, Zhang X Y, et al. Biogeographical patterns of soil microbial community as influenced by soil characteristics and climate across Chinese forest biomes[J]. Applied Soil Ecology, 2018, 124: 298-305. DOI: 10.1016/j.apsoil.2017.11.019. [45] Jeanbille M, BuÉE M, Bach C, et al. Soil parameters drive the structure, diversity and metabolic potentials of the bacterial communities across temperate beech forest soil sequences[J]. Microbial Ecology, 2016, 71(2): 482-493. DOI: 10.1007/s00248-015-0669-5. [46] Zumsteg A, Luster J, Göransson H, et al. Bacterial, archaeal and fungal succession in the forefield of a receding glacier[J]. Microbial Ecology, 2012, 63(3): 552-564. DOI: 10.1007/s00248-011-9991-8. [47] Liang Y T, Xiao X, Nuccio E E, et al. Differentiation strategies of soil rare and abundant microbial taxa in response to changing climatic regimes[J]. Environmental Microbiology, 2020, 22(4): 1327-1340. DOI: 10.1111/1462-2920.14945. [48] Lei M T, Li Y, Zhang W L, et al. Identifying ecological processes driving vertical and horizontal archaeal community assemblages in a contaminated urban river[J]. Chemosphere, 2020, 245: 125615. DOI: 10.1016/j.chemosphere.2019.125615. [49] Chaban B, Ng S Y M, Jarrell K F. Archaeal habitats: from the extreme to the ordinary[J]. Canadian Journal of Microbiology, 2006, 52(2): 73-116. DOI: 10.1139/w05-147. [50] Ma B, Wang H Z, Dsouza M, et al. Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in Eastern China[J]. The ISME Journal, 2016, 10(8): 1891-1901. DOI: 10.1038/ismej.2015.261. [51] Mallick S, Das S. Acid-tolerant bacteria and prospects in industrial and environmental applications[J]. Applied Microbiology and Biotechnology, 2023, 107(11): 3355-3374. DOI: 10.1007/s00253-023-12529-w. [52] Li W T, Liu Q H, Xie L L, et al. Interspecific plant-plant interactions increase the soil microbial network stability, shift keystone microbial taxa, and enhance their functions in mixed stands[J]. Forest Ecology and Management, 2023, 533: 120851. DOI: 10.1016/j.foreco.2023.120851. [53] Creamer R E, Hannula S E, Van Leeuwen J P, et al. Ecological network analysis reveals the inter-connection between soil biodiversity and ecosystem function as affected by land use across Europe[J]. Applied Soil Ecology, 2016, 97: 112-124. DOI: 10.1016/j.apsoil.2015.08.006. [54] Zarafshar M, Vincent G, Korboulewsky N, et al. The impact of stand composition and tree density on topsoil characteristics and soil microbial activities[J]. Catena, 2024, 234: 107541. DOI: 10.1016/j.catena.2023.107541. [55] 刘红梅, 李睿颖, 高晶晶, 等. 保护性耕作对土壤团聚体及微生物学特性的影响研究进展[J]. 生态环境学报, 2020, 29(6): 1277-1284. DOI: 10.16258/j.cnki.1674-5906.2020.06.025. [56] Han S, Delgado-Baquerizo M, Luo X S, et al. Soil aggregate size-dependent relationships between microbial functional diversity and multifunctionality[J]. Soil Biology and Biochemistry, 2021, 154: 108143. DOI: 10.1016/j.soilbio.2021.108143. [57] Kitano H. Biological robustness[J]. Nature Reviews Genetics, 2004, 5(11): 826-837. DOI: 10.1038/nrg1471. [58] Li W, Luo M M, Shi R, et al. Variations in bacterial and archaeal community structure and diversity along the soil profiles of a peatland in Southwest China[J]. Environmental Science and Pollution Research, 2022, 29(2): 2276-2286. DOI: 10.1007/s11356-021-15774-6. [59] Cheng X Y, Yun Y, Wang H M, et al. Contrasting bacterial communities and their assembly processes in karst soils under different land use[J]. Science of the Total Environment, 2021, 751: 142263. DOI: 10.1016/j.scitotenv.2020.142263. [60] Fazi S, Amalfitano S, Pernthaler J, et al. Bacterial communities associated with benthic organic matter in headwater stream microhabitats[J]. Environmental Microbiology, 2005, 7(10): 1633-1640. DOI: 10.1111/j.1462-2920.2005.00857.x. [61] Cheng Y, Zhang H M, Chen Z X, et al. Contrasting effects of different pH-raising materials on N2O emissions in acidic upland soils[J]. European Journal of Soil Science, 2021, 72(1): 432-445. DOI: 10.1111/ejss.12964. [62] Rondon M A, Lehmann J, RamÍRez J, et al. Biological nitrogen fixation by common beans (Phaseolus vulgaris L.) increases with bio-char additions[J]. Biology and Fertility of Soils, 2007, 43(6): 699-708. DOI: 10.1007/s00374-006-0152-z. [63] Di H J, Cameron K C, Shen J P, et al. Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils[J]. Nature Geoscience, 2009, 2(9): 621-624. DOI: 10.1038/ngeo613. [64] Prosser J I, Nicol G W. Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation[J]. Trends in Microbiology, 2012, 20(11): 523-531. DOI: 10.1016/j.tim.2012.08.001. [65] Nicol G W, Leininger S, Schleper C, et al. The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing Archaea and bacteria[J]. Environmental Microbiology, 2008, 10(11): 2966-2978. DOI: 10.1111/j.1462-2920.2008.01701.x. [66] 李煜珊, 李耀明, 欧阳志云. 产甲烷微生物研究概况[J]. 环境科学, 2014, 35(5): 2025-2030. DOI: 10.13227/j.hjkx.2014.05.056. [67] Xiao Y M, Wang J, Wang B, et al. Soil microbial network complexity predicts soil multifunctionality better than soil microbial diversity during grassland-farmland-shrubland conversion on the Qinghai-Tibetan Plateau[J]. Agriculture, Ecosystems & Environment, 2025, 379: 109356. DOI: 10.1016/j.agee.2024.109356. [68] 刘坤和, 薛玉琴, 竹兰萍, 等. 嘉陵江滨岸带不同土地利用类型对土壤细菌群落多样性的影响[J]. 环境科学, 2022, 43(3): 1620-1629. DOI: 10.13227/j.hjkx.202106174. [69] Langille M G I, Zaneveld J, Caporaso J G, et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences[J]. Nature Biotechnology, 2013, 31(9): 814-821. DOI: 10.1038/nbt.2676. [70] Sansupa C, Wahdan S F M, Hossen S, et al. Can we use functional annotation of prokaryotic taxa (FAPROTAX) to assign the ecological functions of soil bacteria?[J]. Applied Sciences, 2021, 11(2): 688. DOI: 10.3390/app11020688. |
| [1] | PANG Lizhen, DU Lina, WANG Bo. Study on Intestinal Microorganisms of Three Freshwater Snails in Lijiang River [J]. Journal of Guangxi Normal University(Natural Science Edition), 2025, 43(5): 207-217. |
| [2] | PENG Suqin, LIU Yulin, MAO Rong, LIU Yuqiu, FAN Yixuan, ZHOU Yushan, YANG Qi. Dynamic Effects of Pinus massoniana Replanted with Broad-leaved Trees of Schima superb on Soil Microbial Biomass Carbon and Nitrogen [J]. Journal of Guangxi Normal University(Natural Science Edition), 2025, 43(1): 150-160. |
| [3] | XIE Qiuli,TANG Yujuan, SU Houren, LI Guangwei, LI Liangbo,WEI Jiguang, HUANG Rongshao. Variation Microbial Biomass and Enzyme Activities in the RhizosphereSoil of the Different Plant Ages of Panax notoginseng [J]. Journal of Guangxi Normal University(Natural Science Edition), 2017, 35(3): 149-156. |
|