Journal of Guangxi Normal University(Natural Science Edition) ›› 2021, Vol. 39 ›› Issue (1): 128-135.doi: 10.16088/j.issn.1001-6600.2020021502
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A Study on Genetic Diversity of Camellia huana by Single-copy Nuclear Gene PAL
LI Shuang1,2,3, LIU Shangli1,2,3, PEI Siyu1,2,3, TANG Shaoqing1,2,3*
- 1. Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection (Guangxi Normal University), Ministry of Education, Guilin Guangxi 541006, China;
2. College of Life Science, Guangxi Normal University, Guilin Guangxi 541006, China;
3. Guangxi Key Laboratory of Rare and Endangered Animal Ecology (Guangxi Normal University), Guilin Guangxi 541006, China
CLC Number:
- Q94
| [1] MING T L,BARTHOLOMEW B.Theaceae[M] // WU Z Y, HONG D Y. Flora of China. Beijing: Science Press,2007: 370. [2] 贺栋业,李晓宇,王丽丽,等. 金花茶化学成分及药理作用研究进展[J]. 中国实验方剂学杂志,2016,22(3): 231-234. [3] 安明态. 贵州自然分布山茶属植物的资源现状[J]. 贵州林业科技,2005(2): 26-29. [4] 谢代祖,牙正高,韩俊严,等. 天峨金花茶分布现状及保护策略研究[J]. 绿色科技,2014(4): 89-91. [5] 覃海宁,杨永,董仕勇,等. 中国高等植物受威胁物种名录[J]. 生物多样性,2017,25(7): 696-744. [6] ZHANG X, SU H L, YANG J, et al. Population genetic structure,migration,and polyploidy origin of a medicinal species Gynostemma pentaphyllum (Cucurbitaceae)[J]. Ecology and Evolution,2019,9(19): 11145-11170. DOI:10.1002/ece3.5618. [7] RIVERS M C,BRUMMITT N A,LUGHADHA E N,et al. Genetic variation in Delonix s.l. (Leguminosae) in Madagascar revealed by AFLPs: fragmentation,conservation status and taxonomy[J]. Conservation Genetics,2011,12(5): 1333-1344. DOI:10.1007/s10592-011-0234-9. [8] ANDIEGO K,DANGASUK O,ODEE D,et al. Genetic diversity of endangered sandalwood (Osyris lanceolata) populations in Kenya using ISSR molecular markers[J]. East African Agricultural and Forestry Journal,2019,83(2): 80-93. DOI:10.1080/00128325.2019.1605964. [9] VARDARELI N,DO [10] 张永德,曾兰,宾石玉,等. 尼罗罗非鱼选育家系的遗传多样性研究[J]. 广西师范大学学报(自然科学版),2014,32(3): 94-101. [11] GAO Y D, GAO X F, HARRIS A. Species boundaries and parapatric speciation in the complex of alpine shrubs,Rosa sericea (Rosaceae),based on population genetics and ecological tolerances[J]. Frontiers in Plant Science,2019,10: 321. DOI:10.3389/fpls.2019.00321. [12] HUANG J,ZENG S Y, ZHAO J H, et al. Genetic variation and phylogenetic relationships among Rehmannia (Scrophulariaceae) species as revealed by a novel set of single-copy nuclear gene markers[J]. Biochemical Systematics and Ecology,2016,66: 43-49. DOI:10.1016/j.bse.2016.03.011. [13] XIAO S Y, JI Y H, LIU J,et al. Genetic characterization of the entire range of Cycas panzhihuaensis (Cycadaceae)[J]. Plant Diversity,2020,42(1): 7-18. DOI:10.1016/j.pld.2019.10.001. [14] DOYLE J J,DOYLE J L. Isolation of plant DNA from fresh tissue[J]. Focus,1990,12: 13-15. [15] MATSUMOTO S,TAKEUCHI A,HAYATSU M,et al. Molecular cloning of phenylalanine ammonia-lyase cDNA and classification of varieties and cultivars of tea plants ( Camellia sinensis ) using the tea PAL cDNA probe[J]. Theoretical and Applied Genetics,1994,89(6): 671-675. DOI:10.1007/BF00223703. [16] WEI S J, LU Y B, YE Q Q, et al. Population genetic structure and phylogeography of Camellia flavida (Theaceae) based on chloroplast and nuclear DNA sequences[J]. Frontiers in Plant Science,2017,8: 718. DOI:10.3389/fpls.2017.00718. [17] 张文驹,闵天禄. 山茶属古茶组植物的细胞学研究[J]. 云南植物研究,1995, 17(1): 48-54. [18] CLARK A G. Inference of haplotypes from PCR-amplified samples of diploid populations[J]. Molecular Biology and Evolution,1990,7(2): 111-122. [19] EDGAR R C. MUSCLE: multiple sequence alignment with high accuracy and high throughput[J]. Nucleic Acids Research,2004,32(5): 1792-1797. DOI:10.1093/nar/gkh340. [20] TAMURA K,DUDLEY J,NEI M,et al. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0[J]. Molecular Biology and Evolution,2007,24(8): 1596-1599. DOI:10.1093/molbev/msm092. [21] LIBRADO P,ROZAS J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data[J]. Bioinformatics,2009,25(11): 1451-1452. DOI:10.1093/bioinformatics/btp187. [22] TAJIMA F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism[J]. Genetics,1989,123(3): 585-595. [23] FU Y X, LI W H. Statistical tests of neutrality of mutations[J]. Genetics,1993,133(3): 693-709. [24] FU Y X. Statistical tests of neutrality of mutations against population growth,hitchhiking and background selection[J]. Genetics,1997,147(2): 915-925. [25] PONS O,PETIT R J. Measuring and testing genetic differentiation with ordered versus unordered alleles[J]. Genetics,1996,144(3): 1237-1245. [26] EXCOFFIER L,LAVAL G,SCHNEIDER S. Arlequin (version 3.0): an integrated software package for population genetics data analysis[J]. Evolutionary Bioinformatics,2005,1: 47-50. DOI:10.1177/117693430500100003. [27] WRIGHT S. Evolution in mendelian populations[J]. Genetics,1931,16(2): 97-159. [28] PEAKALL R, SMOUSE P E. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research:an update[J]. Bioinformatics,2012,28(19): 2537-2539. [29] BANDELT H J,FORSTER P,RÖHL A. Median-joining networks for inferring intraspecific phylogenies[J]. Molecular Biology and Evolution,1999,16(1): 37-48. DOI:10.1093/oxfordjournals.molbev.a026036. [30] CHUNG M Y,LÓPEZ-PUJOL J,SON S,et al. Patterns of genetic diversity in rare and common orchids focusing on the korean peninsula: implications for conservation[J]. The Botanical Review,2018,84(1): 1-25. DOI:10.1007/s12229-017-9190-5. [31] GUSTAFSSON S,SJÖGREN-GULVE P. Genetic diversity in the rare orchid Gymnadenia odoratissima and a comparison with the more common congener,G. conopsea[J]. Conservation Genetics,2002,3(3): 225-234. DOI:10.1023/A:1019969014333. [32] LEVY E,BYRNE M,COATES D J,et al. Contrasting influences of geographic range and distribution of populations on patterns of genetic diversity in two sympatric pilbara acacias[J]. PLoS ONE,2016,11(10): e0163995. DOI:10.1371/journal.pone.0163995. [33] LIU Y,YANG S X, JI P Z, et al. Phylogeography of Camellia taliensis (Theaceae) inferred from chloroplast and nuclear DNA: insights into evolutionary history and conservation[J]. BMC Evolutionary Biology,2012,12(1): 92. DOI:10.1186/1471-2148-12-92. [34] 陈海玲. 薄叶金花茶及其近缘种遗传多样性和遗传结构研究[D]. 桂林:广西师范大学,2018. [35] 路雪林. 金花茶的谱系地理学研究[D]. 桂林:广西师范大学,2018. [36] 陈莉萍. 平果金花茶的保护遗传学研究[D]. 桂林:广西师范大学,2019. [37] NYBOM H,BARTISH I V. Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants[J]. Perspectives in Plant Ecology,Evolution and Systematics,2000,3(2): 93-114. DOI:10.1078/1433-8319-00006. [38] YANG H S, LI X P, LIU D J, et al. Genetic diversity and population structure of the endangered medicinal plant Phellodendron amurense in China revealed by SSR markers[J]. Biochemical Systematics and Ecology,2016,66: 286-292. DOI:10.1016/j.bse.2016.04.018. |
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